Cammareri, Frary A, Frary A, Grandillo S (2022) genetic and genomic approaches  to improve fruit bioactive content: a focus on tomato carotenoids and eggplant anthocyanins. Frontiers in Plants Science (Submitted).

Hampejsová R, Berka M, Berková V, Jersáková J, Domkářová J, von Rundstedt F, Frary A, Saiz-Fernández I, Brzobohatý B, Černý M (2022) Interaction With Fungi Promotes the Accumulation of Specific Defense Molecules in Orchid Tubers and May Increase the Value of Tubers for Biotechnological and Medicinal Applications: The Case Study of Interaction Between Dactylorhiza sp. and Tulasnella calospora. Frontiers in Plants Science 13: 757852.

Tatlıdil E, Gurbuz N, Doğanlar S, Frary A (2022) Development of Liposomal Formulations of Eggplant Glycoalkaloids For The Treatment of Human Oral Squamous Cell Carcinoma. Journal of Drug Delivery Science and Technology 70: 103194.

Şanver U, Baytar AA, Özaktan H, Frary A, Doğanlar S (2022) Determination of Tolerance to Clavibacter michiganensis subsp. michiganensis in Some Tomato Species. Journal of AARI 32(1): 115-123.

Baytar AA, Peynircioğlu C, Sezener V, Frary A, Doğanlar S (2022) Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Gossypium hirsutum L.). Physiology and Molecular Biology of Plants 28: 1049-1060.

Yanar EG, Doğanlar S, Frary A (2022) Development of Single Nucleotide Polymorphism Markers Using Genotyping by Sequencing Technique for Determination of Genetic Diversity and Population Structure in Hazelnut (Submitted).

Colak NG, Eken NT, Ülger M, Frary A, Doğanlar S (2022) Meeting Consumer Demands: Increasing Nutritional Value of Market Tomato (Submitted).

Abuzayed M, Baytar AA, Doğanlar S, Frary A (2022) Characterization and Association Mapping of Morphological Traits in a Worldwide Collection of Faba bean (Vicia faba) (Submitted).

Selale H, Frary A, Doğanlar S (2022) Investigation of Salinity Stress Response and Tolerance in Solanum pennellii IL Lines via Proteomics Approach (Submitted).

Baytar AA, Çelik I, Doğanlar C, Frary A, Doğanlar S (2021) QTL Mapping of Broomrape (Orobanche cumana Wallr.) Resistance in Sunflower (Helianthus annuus L.) Using GNS-SNPs. Turk. J. Field Crops 26(2): 157-162.

Çakır G, Taşçıoğlu T, Çavdar A, Doğanlar S, Frary A, Frary A (2021) Molecular Genetic Characterization of the Turkish National Green Plum (Prunus cerasifera Ehrh.) Collection. Journal of AARI 31(1): 61-73.

Colak NG, Eken NT, Frary A, Doğanlar S (2021) Chromatographic Analysis for Targeted Metabolomics of Antioxidant and Flavor-Related Metabolites in Tomato. Bio-Protocol 11(5): e3929.

Baytar AA, Peynircioğlu C, Sezener V, Frary A, Doğanlar S (2021) Molecular mapping of QTLs for fiber quality traits in Gossypium hirsutum multi-parent recombinant inbred lines. Euphytica 217(9): 181.

Colak NG, Eken NT, Ulger M, Frary A, Doganlar S (2020) Exploring wild alleles from Solanum pimpinellifolium with the potential to improve tomato flavor compounds. Plant Science 298: 110567.

Gurbuz N, Eken NT, Ulger M, Frary A, Doğanlar S (2020) Mapping of Quantitative Trait Loci for Antioxidant Molecules in Tomato: Carotenoids, Vitamins C and E, Glutathione and Phenolic Acids. Plant Science 292: 110393.

Kök AB, Mungan MD, Doğanlar S, Frary A (2020) Transcriptomic Analysis of Selenium Accumulation in Puccinellia distans (Jacq.) Parl., a Boron Hyperaccumulator. Chemosphere 245: 125665.

Frary A, Öztürk SC, Balık HI, Balık SK, Kızılcı G, Doğanlar S, Frary A (2019) Association Mapping of Agro-Morphological Traits in European Hazelnut (Corylus avellana). Euphytica 215: 21.

Öztürk SC, Göktay M, Allmer J, Doğanlar S, Frary A (2019) Development of Simple Sequence Repeat Markers in Hazelnut (Corylus avellana L.) by Next Generation Sequencing and Discrimination of Turkish Hazelnut Cultivars using SSR Barcodes. Plant Molecular Biology Reporter 36(5): 800-811.

Frary A, Öztürk SC, Balık HI, Balık SK, Kızılcı G, Doğanlar S, Frary A (2019) Analysis of European Hazelnut (Corylus avellana L.) Reveals Loci For Cultivar Improvements and The Effects of Domestication and Selection: Nut and Kernel Traits. Molecular Genetics and Genomics 294: 519-527.

Baytar AA, Peynircioğlu C, Sezener V, Başal H, Frary A, Frary A, Doğanlar S (2018). Identification of Stable QTLs for Fiber Quality and Plant Structure in Upland Cotton (G. hirsutum L.) Under Drought Stress. Industrial Crops and Products 124: 776-786.

Taşcıoğlu T, Sadıkoğlu N, Doğanlar S, Frary A (2018) Population Structure Among Twenty-Four Turkish Origanum L. Taxa with SRAP and EST-SSR Analyses from an Herbarium Collection. Industrial Crops and Products 123: 746-761.

Gürbüz N, Uluışık S, Frary A, Frary A, Doğanlar (2018) Health Benefits and Bioactive Compounds of Eggplant. Food Chemistry 268: 602-610.

Baytar AA, Peynircioğlu C, Sezener V, Başal H, Frary A, Frary A, Doğanlar S (2018) Genome-Wide Association Mapping of Yield Components and Drought Tolerance Related Traits in Cotton. Molecular Breeding 38: 74.

Özturk SE, Göktay M, Has C, Babaoğlu M, Allmer J, Doğanlar S, Frary A (2018) Transcriptomic Analysis of Boron Hyperaccumulation Mechanisms in Puccinellia distans. Chemosphere 199: 390-401.

Abuzayed M, Frary A, Doğanlar S (2018) Genetic diversity of some Palestinian and Turkish olive (Olea europaea L.) germplasm determined with SSR markers. IUG Journal of Natural Studies 26(1): 10-17.

Kök AB, Doğanlar S, Frary A (2018) Molecular Genetic Diversity of the Selenium Hyperaccumulator Stanleya pinnata. Polymorphism 1(1): 1-9.

Öztürk SC, Balık HI, Kızılcı G, Balık SK, Duyar Ö, Doğanlar S, Frary A (2017) Investigation of Molecular Genetic Diversity of the Turkish Hazelnut Collection and Selection of Core Set. Tree Genetics & Genomes 13: 113.

Şelale H, Dağlı F, Mutlu N, Doğanlar S, Frary A (2017) Cry1Ac-Mediated Resistance to Tomato Leaf Miner (Tuta absoluta) in Tomato. Plant Cell, Tissue and Organ Culture 131(1): 65-73.

Göl Ş, Doğanlar S, Frary A (2017) Relationship between Geographical Origin, Seed Size and Genetic Diversity in Faba Bean (Vicia faba L.) as Revealed by SSR Markers. Molecular Genetics and Genomics 292(5): 991-999.

Uncu AT, Uncu A, Frary A, Doğanlar S (2017) Barcode DNA Length Polymorphisms vs Fatty Acid Composition in Adulteration Detection in Olive Oil. Food Chemistry 221: 1026-1033.

Göl Ş, Göktay M, Allmer J, Doğanlar S, Frary A (2017) Newly Developed SSR Markers Reveal Genetic Diversity and Geographical Clustering in Spinach (Spinacia oleracea). Molecular Genetics and Genomics 292(4): 847-855.

Baytar AA, Erdoğan E, Frary A, Frary A, Doğanlar S (2017) Molecular diversity and identification of alleles for Verticillium wilt resistance in elite cotton (Gossypium hirsutum L.) germplasm. Euphytica 213: 31.

Celik I, Uncu AT, Nergiz Gurbuz, Frary A, Doğanlar S (2017) Genome-wide SNP discovery and QTL mapping for fruit quality traits in inbred backcross lines (IBLs) of Solanum pimpinellifolium using GBS. BMC Genomics 18: 1.

Abuzayed M, ElDabba N, Frary A, Doğanlar S (2017) GDdom: an online tool for calculation of dominant marker gene diversity. Biochemical Genetics 55: 155-157.

Abuzayed M, Göktay M, Allmer J, Doğanlar S, Frary A (2017) Development of genomic simple sequence repeat markers in faba bean by next generation sequencing. Plant Molecular Biology Reporter 35(1): 61-71.

Öztürk SC, Öztürk SE, Celik I, Stambar F, Veberic R, Doğanlar S, Solar A, Frary A (2017) Molecular genetic diversity and association mapping of Nut and Kernel Trait in Slovenian Hazelnuts (Corylus avellana L.). Tree Genetics & Genomes 13: 16.

Uncu AO, Frary A, Karlovsky P, Doğanlar S (2016) A High-density Physical Map of the Sesame (Sesamum indicum L.) Genome Constructed with GBS (Genotyping by Sequencing) Analysis. Molecular Breeding 36(12): 173.

Frary A, Doğanlar S, Frary A (2016) Synteny Among Solanaceae Genomes. In: M Causse, J Giovannoni, MZ Bouzayen (Eds.), The Tomato Genome, Springer-Verlag Berlin Heidelberg Publishers, pp: 217-243.

Celik I, Bodur S, Frary A, Doganlar S (2016) Genome-wide SNP discovery and genetic linkage map constructionin sunflower (Helianthus annuus L.) using a genotyping by sequencing (GBS) approach. Molecular Breeding 36: 133.

Celik I, Söğüt MA, Ozkaynak E, Doğanlar S, Frary A (2016) Physical mapping of NBS-coding resistance genes to the Me-gene cluster on chromosome P9 reveals markers tightly linked to the N gene for root-knot nematode resistance in pepper. Molecular Breeding 36: 137.

Göl Ş, Doğanlar S, Frary A, (2016) Genetic Diversity and Population Structure of Faba Bean (Vicia faba) from Turkey. HortScience 51(8):980–983.

Celik I, Camcı H, Köse A, Kosar FC, Doğanlar S, Frary A (2016) Molecular genetic diversity and association mapping of morphine content and agronomic traits in Turkish opium poppy (Papaver somniferum) germplasm. Molecular Breeding 36(4): 46.

Bar C, Doğanlar S, Frary A (2015) Genetic relationships among Eurasian Puccinellia distans. Biochemical Systematics and Ecology 62: 20-24.

Ozturk NG, Karabey F, Ozturk TK, Kılınc A, Frary A, Doğanlar S (2015) Glycoalkaloid Isolation From Solanum Linnaeanum Berries. Fruits 70(6): 371-375.

Uncu AO, Uncu A, Celik İ, Doganlar S, Frary A (2015) A Primer to Molecular Phylogenetic Analysis in Plants. Critical Reviews in Plant Sciences 34(4):454-468.

Uncu AT, Uncu AÖ, Frary A, Doğanlar S (2015) Authentication of Botanical Origin in Herbal Teas by Plastid Non-coding DNA Length Polymorphisms. Journal of Agric & Food Science 63: 5920-5929.

Uncu AÖ, Gültekin V, Allmer J, Frary A, Doğanlar S (2015) Genomic SSR MarkersReveal Patterns of Genetic Relatedness and Diversity in Sesame. The Plant Genome 8(2):1-12.

Uncu, AT, Celik I, Devran Z, Ozkaynak E, Frary A Frary A, Doganlar S (2015) Development of a SNP-based CAPS assay for the Me1 gene conferring resistance to root knot nematode in pepper. Euphytica 206(2): 393-399.

Uncu, AT, Frary A, Doğanlar S (2015) Cultivar Origin and Admixture Detection in Turkish Olive Oils by SNP-based CAPS Assays. Journal of Agric & Food Science 63 (8): 2284-2295.

Frary A, Tekin P, Çelik I, Furat Ş, Uzun B, Doğanlar S (2015) Morphological and Molecular Diversity in Turkish Sesame Germplasm and Selection of a Core Set of Accessions for Inclusion in the National Collection. Crop Science 55: 702-711.

Top O, Bar C, Ökmen B, Özer DY, Rusçuklu D, Tamer N, Frary A and Doğanlar S (2014) Exploration of Three Solanum Species for Improvement of Antioxidant Traits in Tomato. HortScience 49:1003-1009.

Özkaynak E, Devran Z, Kahveci E, Doğanlar S, Başköylü B, Doğan F, İşleyen M, Yüksek A, Yüksel M (2014) Pyramiding Multiple Genes for Resistance to PVY, TSWV and PMMoV in Pepper Using Molecular Markers. European Journal of Horticultural Sciences 79: 233-239.

Doğanlar S, Frary A, Daunay MC, Huvenaars K, Mank R, Frary A (2014). High resolution map of eggplant (Solanum melongena) reveals extensive chromosome rearrangement in domesticated members of the Solanaceae Euphytica 198: 231-241.

Frary A, Frary A, Daunay MC, Huvenaars K, Mank R, Doğanlar S (2014). QTL hotspots in eggplant (Solanum melongena) detected with a high resolution map and CIM analysis. Euphytica 197: 211-228.

Celik I, Gultekin V, Allmer J, Doganlar S, Frary A (2014). Development of genomic simple sequence repeat markers in opium poppy by next-generation sequencing. Molecular Breeding 34: 323-334.

Frary A, Doganlar S (2013) Eggplant. In: Genetics, Genomics and Breeding of Peppers and Eggplants, ed. Kang BC and Kole S, CRC Press, pp. 116-144.

Uncu AO, Doganlar S, Frary A (2013) Biotechnology for enhanced nutritional quality in plants.Crit Rev Plant Sci 32:321-343.

Selale H, Celik I, Gultekin V, Allmer J, Doganlar S, Frary A (2013) Development of EST-SSR markers for diversity and breeding studies in opium poppy. Plant Breed 132:344-351.

Frary A, Sıgva HO, Tan A, Taskin T, Inal A, Mutlu S, Haytaoglu M, Doganlar S (2013) Molecular genetic diversity in the Turkish national melon collection and selection of a preliminary core set. J Amer Soc HortSci 138:50-56.

Lebeau A, Gouy M, Daunay MC, Wicker E, Chiroleu F, Prior P, Frary A, Dintinger J (2013) Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant. TheorAppl Genet 126:143-158.

Selale H, Sıgva HO, Celik I, Doganlar S, Frary A (2012) Water-soluble antioxidant potential of melon lines grown in Turkey. Inter J Food Prop, 15:145-156.

Frary A, Frary A (2012) Physiology of metabolites. In: Peppers: Botany, Production and Uses, chapter 13, ed. V. Russo, CABI Publishers, pp. 176-188.

Isik N, Doganlar S, Frary A (2011) Genetic diversity of Turkish olive varieties assessed by simple sequence repeat and sequence-related polymorphism markers. Crop Sci 51:1646-1654.

Frary A, Keles D, Pinar S, Gol D, Doganlar S (2011) Salt tolerance in Lycopersicon pennellii introgression lines: QTL related to physiological responses. Biologia Plantarum, 55:461-468.

Uluturk ZI, Frary A, Doganlar S (2011) Determination of genetic diversity in watermelon germplasm. Aust J Crop Sci 5:1832-1836.

Tumbilen Y, Frary A, Daunay MC, Doganlar S (2011) Application of EST-SSRs to examine genetic diversity in eggplant and its close relatives. Turk J Biol, 35:125-136.

Tumbilen Y, Frary A, Doganlar S (2011) Genetic diversity in Turkish eggplant (Solanum melongena) varieties as determined by morphological and molecular analyses. Inter Res J Biotech, 2:16-25

Okmen B, Sigva HO, Gurbuz N, Ulger M, Frary A, Doganlar S (2011) Quantitative trait loci (QTL) analysis for antioxidant and agronomically important traits in tomato (Lycopersicon esculentum). Turk J Agric Forest, 35:501-514.

Lebeau A, Daunay MC, Frary A, Palloix A, Wang JF, Dintinger J, Chiroleu F,Wicker E, Prior P (2011) Bacterial wilt resistance in tomato, pepper, and eggplant: genetic resources respond todiverse strains in the Ralstonia solanacearum species complex. Phytopathology 101:154-165.

Frary A, Göl D, Keleş D, Ökmen B, Pınar H, Şığva H, Yemenicioğlu A, Doğanlar S (2010) Salt tolerance in Solanum pennellii: antioxidant response and related QTL.  BMC Plant Biology 10:58.

Doganlar O, Doganlar M, Frary A (2010) Preliminary phylogeny of the thrips parasitoids of Turkey based on some morphological scales and 28SD2 rDNA with description of a new species. Turk J Zool 34:279-289.

Doganlar O, Doganlar M, Frary A (2010) The current status of thrips parasitoids Ceranisus (Hymenoptera: Eulophidae) species in Turkey based on morphology and 28SD2 rDNA. Turk J Entomology 34:89-104.

Okmen B,Sigva HO, Mutlu S, Doganlar S, Yemenicioglu A, Frary A (2009) Total antioxidantactivity and total phenolic contents in different Turkisheggplant (Solanum melongena L.) cultivars. Inter J of Food Prop 12:616-624.

Celebi-Toprak F, Barutcu E, Frary A, Doganlar S (2009) Identification of Potato Y Potyvirus (PVY) resistance in wild and cultivated tomato. Turk J Agric For 33:11-17.

Eanes RC, Tek N, Kirsoy O, Frary A, Doganlar S, Almeida AE (2008) Development of practical HPLC methods for the separation and determination of eggplant steroidal glycoalkaloids and their aglycones. J Liquid Chroma & Related Technol 31:984-1000.

Frary A, Keceli MA, Okmen B, Sigva HO, Yemenicioglu A, Doganlar S (2008) Water soluble antioxidant potential of Turkish pepper cultivars. Hortscience 43:631-636.

Frary A, Doganlar S and Ratnaparkhe MB (2008) Comparative mapping. In: Principles and Practices of Plant Genomics, eds. C Kole, AG Abbott AG, Science Publishers, Inc. Enfield, New Hampshire, pp 205-228.

Frary A, Daunay MC, Doganlar S (2007) Eggplant. In: Genome Mapping and Molecular Breeding in Plants: Vegetables, ed. C. Kole, Springer, pp. 287-311.

Frary A, Xu Y, Liu J, Mitchell S, Tedeschi E, Tanksley SD (2005)  Development of a set of PCR-based anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments.  Theor Appl Genet 111:291-312.

Frary A, Van Eck J (2005) Organogenesis from transformed tomato explants. In: L. Pena (ed.), Transgenic Plants: Methods and Protocols (Methods in Molecular Biology Series), pp. 141-150, Humana Press.

Frary A, Fulton TM, Zamir D, Tanksley SD (2004) Advanced backcross QTL analysis of a Lycopersicon esculentum x L. pennellii cross and identification of possible orthologs in the Solanaceae. Theor Appl Genet 108:485-96.

Yates HE, Frary A, Doganlar S, Frampton A, Eannetta N, Uhlig J, Tanksley SD (2004) Comparative fine mapping of fruit quality QTLs on chromosome 4 introgressions derived from two wild tomato species. Euphytica 135:283-296.

Frary A, Doganlar S, Daunay CM, Tanksley SD (2003) QTL analysis of morphological traits in eggplant and its implications for conservation of gene function during evolution of Solanaceous species.  Theor Appl Genet 107:359-370.

Frary A, Doganlar S, Frampton A, Fulton T, Uhlig J, Yates H, Tanksley SD (2003) Fine mapping of quantitative trait loci for improved fruit characteristics from Lycopersicon chmielewskii chromosome 1.  Genome 46:235-243.

FraryA, Doganlar S (2003) Comparative genetics of crop plant domestication and evolution. Turk J Agric For 27:59-69.

Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD (2002) A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the Solanaceae. Genetics 161:1697-1711.

Frary A, Doganlar S, Daunay MC, Lester RN, Tanksley SD (2002) Conservation of gene function in the Solanaceae as revealed by comparative mapping of domestication traits in eggplant. Genetics. 161:1713-1726.

Doganlar S, Frary A, Ku HK, Tanksley SD (2002) Mapping quantitative trait loci in inbred backcross lines of Lycopersicon pimpinellifolium (LA1589).  Genome 45:1189-1202.

Daunay MC, Lester RN, Gebhardt C, Hennart JW, Jahn M, Frary A, Doganlar S (2001) Genetic resources of eggplant (Solanum melongena) and allied species: a new challenge for molecular geneticists and eggplant breeders.   In: RG van den Berg, GW Barendse, C Mariani (eds.), Solanaceae V, Advances in Taxonomy and Utilization, pp. 251-274.  Nijmegen, The Netherlands, Nijmegen University Press.

Ku HM, Liu J, Doganlar S and Tanksley SD (2001) Exploitation of arabidopsis-tomato synteny to construct a high-resolution map of the ovate-containing region in tomato chromosome 2. Genome 44:470-475.

Doganlar S, Tanksley SD and Mutschler MA (2000) Identification and molecular mapping of loci controlling fruit ripening time in tomato. Theor Appl Genet 100:249-255.

Frary A, Hamilton CM (2001) Efficiency and stability of high molecular weight DNA transformation: an analysis in tomato.  Transgenic Research 10:121-132.

Frary A, Tanksley SD (2001) The molecular map of tomato.  In: RL Phillips and IK Vasil (eds.), DNA-Based Markers in Plants, Boston, Kluwer Academic Publishers.

Frary A, Nesbitt TC, Frary A, Grandillo S, Van derKnaap E, Cong B, Liu J, Meller J, Elber R, Alpert K, Tanksley SD (2000)  fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289:85-88.

Brommonschenkel S, Frary A, Frary A, Tanksley SD (2000) The broad spectrum tospovirus resistance gene Sw-5 of tomato is a homolog of the root knot nematode resistance gene Mi.  Mol Plant Microbe Interact 13:1130-1138.

Doganlar S, FraryA, Tanksley SD (2000) The genetic basis of seed weight variation: tomato as a model system. Theor Appl Genet 100:1267-1273.

Hamilton CM, Frary A, Xu Y, Tanksley SD, Zhang H (1999) Construction of high molecular weight genomic DNA libraries in a binary BAC (BIBAC) vector. Plant Journal 18:223-229.

Ku HM, Doganlar S and Tanksley SD (1999) Genetic basis of pear-shaped fruit in tomato. Theor Appl Genet 99:844-850.

Doganlar S, Dodson J, Gabor B, Beck-Bunn T, Crossman C, and Tanksley SD (1998) Molecular mapping of the py-1 gene for corky root rot resistance in tomato. Theor Appl Genet 97:784-788.

Doganlar S, FraryA, Tanksley SD (1997) Production of interspecific hybrids, BC1, BC2 and BC3 populations between Lycopersicon esculentum and two accessions of L. peruvianum carrying  new root-knot nematode resistance genes. Euphytica 95:203-207.

Chunwongse J, Doganlar S, Crossman C and Tanksley SD (1997. High resolution genetic map of Lv resistance locus in tomato. Theor Appl Genet 95: 220-223.

Frary A, Earle ED (1996) An examination of factors affecting the efficiency of Agrobacterium-mediated transformation of tomato. Plant Cell Reports 16:235-240.

Martin GB, Frary A, Wu T, Brommonschenkel SH, Chunwongse J, Earle ED, Tanksley SD (1994) A member of the tomato Pto gene family confers sensitivity to fenthion resulting in rapid cell death. Plant Cell 6:1543-1552.

Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-1436.